Strand NGS: An integrated platform that provides analysis, management and visualization tools for next-generation sequencing data.
CIRCOS: A software package for visualizing NGS data and information.
IGV: A high-performance visualization tool for interactive exploration of large, integrated next-generation sequencing data.
Tablet : A lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
Bamview : A free interactive display of read alignments in BAM data files. It has been developed by the Pathogen Group at the Sanger Institute.
EagleView : An information-rich genome assembler viewer with data integration capability.
NGSView : A generally applicable, flexible and extensible next-generation sequence alignment editor.
ZOOM Lite : A next-generation sequencing data mapping and visualization software.
UCSC Genome Browser: A genome browser for any genomic region of specific interest.
Genplay : An analyzer and browser for high-throughput data that is being developed by the Stem Cell Genomic Unit at the Albert Einstein College of Medicine of Yeshiva University in New York City.
Savant : A next-generation genome browser designed for the latest generation of genome data.
ABrowse : A customizable genome browser framework .
Integrated Genomic Browser : An easy-to-use, highly customizable genome browser you can use to view and explore genomic data and annotations, especially RNA-Seq and ChIP-Seq data sets
Artemis : A free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.