Comprehensive Resources for Cancer NGS Data Analysis

LIST OF CANCER RESOURCES

CANGENEBASE (CGB) - DATABASE ON CANCER-RELATED GENES

CANCER BROWSER-UCSC Genome Browser

INTOGEN -Integrative Oncogenomics Cancer Browser

CANCER GENOME ATLAS-Understanding Genomics to improve Cancer care

CANCER GENOME WORK BENCH (CGWB) -Developed by The National Cancer Institute

COSMIC - Catalogue of Somatic Mutations In Cancer

CCDB - Cervical Cancer Gene Database

CRAVAT - Cancer-related analysis of variants toolkit

dbCerEx - database of Cervical Cancer Gene Expression

FISH ORACLE 2 - integrative analysis of cancer genomics data

G2SBC - Genes-to-Systems Breast Cancer Database

GeMDBJ Proteomics - integrated proteome database for use in cancer research

DrGaP- Designed to identify Driver Genes and Pathways in cancer genome sequencing studies

DDPC - knowledgebase of genes experimentally verified as implicated in prostate cancer (PC)

HLungDB - integrated database of human lung cancer research

HCCNet - Hepatocellular carcinoma network database

KEGG CANCER - integrated resource of various types of cancer information stored in KEGG

Liverome - curated database of liver cancer-related gene signatures

Oncotator - tool for annotating human genomic point mutations and indels with data relevant

ONCOFUSE - predict the oncogenic potential of fusion genes found by Next-Generation Sequencing in cancer cells

PubMeth - reviewed methylation database in cancer

The Tumor Gene Family of Databases - information about genes which are targets for cancer-causing mutations

SCDE - Stem Cell Discovery Engine

TSGene - Tumor Suppressor genes in the database